Development of a workflow for protein sequence analysis based on the Taverna Workbench® Software

A workflow based on the Taverna Workbench® software and tentatively named WPSA was developed to perform a generic protein sequence analysis eliminating the need to cut and paste data throughout web applications. The program performs a homology search, a multiple sequence alignment and a phylogeny an...

ver descrição completa

Detalhes bibliográficos
Autor principal: Monteiro, Mariana B. (author)
Outros Autores: Pintado, Manuela E. (author), Malcata, F. Xavier (author), Bessant, Conrad (author), Moreira, Patrícia R. (author)
Formato: conferenceObject
Idioma:eng
Publicado em: 2011
Assuntos:
Protein sequence analysis
Taverna Workbench®
Workflow
Web services
Texto completo:http://hdl.handle.net/10400.14/5443
País:Portugal
Oai:oai:repositorio.ucp.pt:10400.14/5443
Descrição
Resumo:A workflow based on the Taverna Workbench® software and tentatively named WPSA was developed to perform a generic protein sequence analysis eliminating the need to cut and paste data throughout web applications. The program performs a homology search, a multiple sequence alignment and a phylogeny analysis using PHYLogeny Interface Package (PHYLIP). The workflow designed gives a fast and significant answer to the user about the input sequence entered taking between 5 to 10 minutes to run depending on the Internet connection and web services.

Registros relacionados