Mapping antifungal drug resistance in Candida albicans by genomic approaches

Candida albicans is the leading cause of life-threatening invasive fungal infections with mortality rates approaching 40%, despite treatment. Resistance to the commonly used azoles is increasing and alternative antifungals, such as amphotericin B or echinocandins, increase the cost of antifungal the...

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Bibliographic Details
Main Author: Sousa, Gonçalo Filipe Giesta de (author)
Format: masterThesis
Language:eng
Published: 2024
Subjects:
Online Access:http://hdl.handle.net/10773/33030
Country:Portugal
Oai:oai:ria.ua.pt:10773/33030
Description
Summary:Candida albicans is the leading cause of life-threatening invasive fungal infections with mortality rates approaching 40%, despite treatment. Resistance to the commonly used azoles is increasing and alternative antifungals, such as amphotericin B or echinocandins, increase the cost of antifungal therapy. Despite the economic and clinical relevance of antifungal drug resistance, this subject remains poorly studied. Here, we investigated the role of protein mistranslation, a characteristic mechanism used by C. albicans to diversify its proteome, in the evolution of antifungal resistance. We used whole-genome sequencing to unravel the evolutionary paths leading to the emergence of resistance in hypermistranslating C. albicans strains subjected to experimental evolution with drugs from two major classes of antifungals (polyenes, azoles). Results showed that high levels of mistranslation accelerate the acquisition of azole resistance, but not polyene resistance. Hypermistranslation caused more rapid and frequent evolution of fluconazole resistance mediated through CNVs affecting the classical drug efflux and ergosterol biosynthesis pathways, while itraconazole resistant isolates showed aneuploidies affecting transport. In the evolution with the polyene Amphotericin B, hypermistranslation seemed to delay acquisition of resistance with genome changes summed up to SNPs and INDELs in filamentation genes.