Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms

High-throughput sequencing has opened up exciting possibilities in population and conservation genetics by enabling the assessment of genetic variation at genome-wide scales. One approach to reduce genome complexity, i.e. investigating only parts of the genome, is reduced-representation library (RRL...

Full description

Bibliographic Details
Main Author: Greminger, Maja P (author)
Other Authors: Stölting, Kai N (author), Nater, Alexander (author), Goossens, Benoit (author), Arora, Natasha (author), Bruggmann, Rémy (author), Patrignani, Andrea (author), Nussberger, Beatrice (author), Sharma, Reeta (author), Kraus, Robert H S (author), Ambu, Laurentius N (author), Singleton, Ian (author), Chikhi, Lounes (author), van Schaik, Carel P (author), Krützen, Michael (author)
Format: article
Language:eng
Published: 2015
Subjects:
Next-generation sequencing
Single-nucleotide polymorphisms
Reduced-representation libraries
Bioinformatics
GATK
SAMtools
CLC genomics workbench
Great apes
Online Access:http://hdl.handle.net/10400.7/347
Country:Portugal
Oai:oai:arca.igc.gulbenkian.pt:10400.7/347

Internet

http://hdl.handle.net/10400.7/347

Similar Items