Ion-exchange membranes for protein crystallization and protein crystals’ derivatization

This PhD thesis is focused on the application of ion-exchange membranes for protein crystallization and protein crystals derivatization. The experimental work is divided in three parts. The first part of the work is focused on the understanding of the effect of topography on nucleation. Soft lithogr...

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Bibliographic Details
Main Author: Polino, Mariella (author)
Format: doctoralThesis
Language:eng
Published: 2019
Subjects:
Online Access:http://hdl.handle.net/10362/73017
Country:Portugal
Oai:oai:run.unl.pt:10362/73017
Description
Summary:This PhD thesis is focused on the application of ion-exchange membranes for protein crystallization and protein crystals derivatization. The experimental work is divided in three parts. The first part of the work is focused on the understanding of the effect of topography on nucleation. Soft lithography is used to modify the surface topography of Nafion® membranes with target designs, avoiding changes of surface chemistry that might mask the effect of topography on nucleation. The imprinted membranes are characterized by Atomic Force Microscopy (AFM), Scanning Electron Microscopy (SEM) and contact angle and tested for the crystallization of Trypsin from Bovine Pancreas. Nucleation and crystals growth are followed over time by optical microscope. Experimental results are compared with theoretical calculations of the ratio of change of Gibbs free energy of heterogeneous to homogeneous nucleation. The second part of the work is focused on the development of a method for performing a gentle derivatization of protein crystals using ion-exchange membranes. Nafion® and Neosepta 01 were selected after an initial screening of several membranes, due to their ability of promoting nucleation. The kinetics of ion-transport for Br, PtCl2 4 and Hg2+ is evaluated and used for modelling the transport in the derivatization set-up. Stability of crystals derivatized by ion-exchange membranes over time is compared with the stability of crystals derivatized by the conventional soaking method. The crystals derivatized by the help of the ionexchange membranes are analysed by synchrotron and protein structure resolved with the Isomorphous Replacement technique. The third part of the work involves the integration of the ion-exchange membrane derivatization concept in a Polydimethylsiloxane (PDMS) microdevice. A microdevice composed of two compartments, one with channels and one with wells is designed and built by photolithography and soft-lithography. Bonding of the membrane to the PDMS parts is done by grafting. Transport modelling of water, NaCl and Hg2+ transport in the microdevice, crystallization experiments where supersaturation is achieved by osmosis and evaluation of the crystals’ diffraction quality are performed.