CoBAMP: A Python framework for metabolic pathway analysis in constraint-based models

CoBAMP is a modular framework for the enumeration of pathway analysis concepts, such as elementary flux modes (EFM) and minimal cut sets in genome-scale constraint-based models of metabolism. It currently includes the K-shortest EFM algorithm and facilitates integration with other frameworks involvi...

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Bibliographic Details
Main Author: Vieira, Vítor (author)
Other Authors: Rocha, Miguel (author)
Format: article
Language:eng
Published: 2019
Subjects:
Online Access:http://hdl.handle.net/1822/64166
Country:Portugal
Oai:oai:repositorium.sdum.uminho.pt:1822/64166