Automatic annotation of cellular data

Life scientists often need to count cells in microscopy images, which is very tedious and a time consuming task. Henceforth, automatic approaches can be a solution to this problem. Several works have been devised for this issue, but the majority of these approaches degrade their performance in case...

Full description

Bibliographic Details
Main Author: Neves, João (author)
Format: masterThesis
Language:eng
Published: 2015
Subjects:
Online Access:http://hdl.handle.net/10400.6/3696
Country:Portugal
Oai:oai:ubibliorum.ubi.pt:10400.6/3696
Description
Summary:Life scientists often need to count cells in microscopy images, which is very tedious and a time consuming task. Henceforth, automatic approaches can be a solution to this problem. Several works have been devised for this issue, but the majority of these approaches degrade their performance in case of cell overlapping. In this dissertation we propose a method to determine the position of macrophages and parasites in uorescence images of Leishmania-infected macrophages. The proposed strategy is mainly based on blob detection, clustering and separation using concave regions of the cells' contour. By carrying out a comparison with other approaches that also addressed this type of images, we concluded that the proposed methodology achieves better performance in the automatic annotation of Leishmania infections.